Amphritea japonica

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Oceanospirillaceae

Genus

Amphritea

Description

Amphritea japonica is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is notable for possessing three replicons, which are vital for its genetic stability and adaptability in various environments. The genetic information related to Amphritea japonica can be found in several accessions, specifically AP025761.1, AP025762.1, and AP014545.1. As a Gram-negative bacterium, Amphritea japonica features a distinctive cell wall structure that includes an outer membrane, which contributes to its resilience against certain antibiotics and environmental stresses. This trait is common among Gram-negative bacteria and plays a significant role in their survival strategies. The presence of multiple replicons may confer advantages in terms of genetic flexibility, allowing Amphritea japonica to adapt to fluctuating conditions in its habitat. Understanding the genetic architecture and traits of Amphritea japonica can provide insights into its ecological roles, particularly in marine environments where it may contribute to nutrient cycling and interact with other microbial communities. Overall, the characteristics of Amphritea japonica highlight its potential significance in microbiological research and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyOceanospirillaceae
GenusAmphritea
SpeciesAmphritea japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amphritea japonica , Complete Genome

Gene Summary

Adenine Count

989943 bp

Thymine Count

996795 bp

Guanine Count

905068 bp

Cytosine Count

893892 bp

Genome Length

3785698 bp

Protein-coding Genes

3355 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv pilus assembly protein pilmAMJAP_0298G3XD28Positive331422 - 33251038887.4
type iv pilus assembly protein pilnAMJAP_0299G3XD30Positive332516 - 33306420806.2
type iv pilus assembly protein piloAMJAP_0300G3XD51Positive333066 - 33366822086.7
type iv pilus assembly protein pilpAMJAP_0301G3XCX7Positive333652 - 33420020468.6
type iv pilus assembly protein pilqAMJAP_0302P34750Positive334200 - 33631176192.2
shikimate kinaseAMJAP_0303Q5X6H1Positive336322 - 33684019204.0
3-dehydroquinate synthaseAMJAP_0304C5BRJ7Positive336855 - 33793138937.8
damx proteinAMJAP_0305P45459Positive337944 - 33951256715.1
glutamate synthase (nadph/nadh) large chainAMJAP_0306E1V8I1Positive339687 - 344141162169.0
glutamate synthase (nadph/nadh) small chainAMJAP_0307E1V8I0Positive344214 - 34563552273.1

Displaying genes 3831 – 3840 of 6988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.