Sphingomonas sediminicola

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sediminicola is a rod-shaped bacterium known for its motility, as it possesses flagella. This feature allows the organism to move through its environment, which can be crucial for its survival and interaction with other microorganisms. The species is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various ecological niches. The genome of Sphingomonas sediminicola can be referenced via the accession number CP178916.1, which provides a comprehensive source of genetic information for researchers interested in its biology and potential applications. Understanding the genomic makeup of this organism can facilitate insights into its metabolic capabilities and environmental roles. In ecological terms, the presence of Sphingomonas sediminicola in sediments suggests its involvement in biogeochemical cycles, particularly in the degradation of organic materials. As a member of the Sphingomonad group, it is likely to participate in the breakdown of complex compounds, contributing to nutrient cycling in its habitat. The ability to thrive in sediment environments highlights its potential importance in maintaining ecosystem health and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sediminicola
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sediminicola
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sediminicola , Complete Genome

Gene Summary

Adenine Count

510747 bp

Thymine Count

512278 bp

Guanine Count

866983 bp

Cytosine Count

866574 bp

Genome Length

2756582 bp

Protein-coding Genes

2791 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf6445 family proteinACMC5O_000382Not AvailablePositive368959 - 36964825320.9
family 43 glycosylhydrolaseACMC5O_000383P48791Positive369700 - 37090845436.9
hypothetical proteinACMC5O_000384Not AvailablePositive370919 - 37149121427.3
glucoamylase family proteinACMC5O_000385A6LGF6Negative371492 - 37291953382.0
laci family dna-binding transcriptional regulatorACMC5O_000386P41030Negative372916 - 37391435306.2
glycoside hydrolase family 3 n-terminal domain-containing proteinACMC5O_000387Q56078Positive374072 - 37635781815.0
glycoside-pentoside-hexuronide (gph):cation symporterACMC5O_000388P75683Negative376354 - 37764645717.4
glycoside hydrolase family 31 proteinACMC5O_000389Q9F234Negative377679 - 38008788732.8
ubiquinol oxidase subunit iiACMC5O_000390Q9I427Positive380245 - 38115032565.7
cytochrome o ubiquinol oxidase subunit iACMC5O_000391P98057Positive381140 - 38314675261.2

Displaying genes 381 – 390 of 2843 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.