Sphingomonas sediminicola

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sediminicola is a rod-shaped bacterium known for its motility, as it possesses flagella. This feature allows the organism to move through its environment, which can be crucial for its survival and interaction with other microorganisms. The species is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various ecological niches. The genome of Sphingomonas sediminicola can be referenced via the accession number CP178916.1, which provides a comprehensive source of genetic information for researchers interested in its biology and potential applications. Understanding the genomic makeup of this organism can facilitate insights into its metabolic capabilities and environmental roles. In ecological terms, the presence of Sphingomonas sediminicola in sediments suggests its involvement in biogeochemical cycles, particularly in the degradation of organic materials. As a member of the Sphingomonad group, it is likely to participate in the breakdown of complex compounds, contributing to nutrient cycling in its habitat. The ability to thrive in sediment environments highlights its potential importance in maintaining ecosystem health and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sediminicola
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sediminicola
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sediminicola , Complete Genome

Gene Summary

Adenine Count

510747 bp

Thymine Count

512278 bp

Guanine Count

866983 bp

Cytosine Count

866574 bp

Genome Length

2756582 bp

Protein-coding Genes

2791 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exodeoxyribonuclease vii large subunitACMC5O_002792Q2N6Q7Positive2693438 - 269484450667.8
duf2093 domain-containing proteinACMC5O_002793Not AvailablePositive2694848 - 26950577658.11
hypothetical proteinACMC5O_002794Not AvailablePositive2695173 - 269546310235.4
aspartyl/asparaginyl beta-hydroxylase domain-containing proteinACMC5O_002795Q28056Positive2695785 - 269705647263.1
atp-dependent chaperone clpbACMC5O_002796Q6N1H2Negative2697058 - 269966495349.5
d-ala-d-ala carboxypeptidase family metallohydrolaseACMC5O_002797Not AvailableNegative2699728 - 270054929672.3
polyhydroxyalkanoic acid system family proteinACMC5O_002798Not AvailablePositive2700614 - 270094011998.7
fad-dependent oxidoreductaseACMC5O_002799O32886Positive2700948 - 270225846902.4
Trna-proNot AvailableNot AvailablePositive2702352 - 2702428Not Available
fmn-dependent l-lactate dehydrogenase llddACMC5O_002801A4XYG7Negative2702430 - 270357241324.8

Displaying genes 2791 – 2800 of 2843 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.