Sphingomonas sediminicola

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sediminicola is a rod-shaped bacterium known for its motility, as it possesses flagella. This feature allows the organism to move through its environment, which can be crucial for its survival and interaction with other microorganisms. The species is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various ecological niches. The genome of Sphingomonas sediminicola can be referenced via the accession number CP178916.1, which provides a comprehensive source of genetic information for researchers interested in its biology and potential applications. Understanding the genomic makeup of this organism can facilitate insights into its metabolic capabilities and environmental roles. In ecological terms, the presence of Sphingomonas sediminicola in sediments suggests its involvement in biogeochemical cycles, particularly in the degradation of organic materials. As a member of the Sphingomonad group, it is likely to participate in the breakdown of complex compounds, contributing to nutrient cycling in its habitat. The ability to thrive in sediment environments highlights its potential importance in maintaining ecosystem health and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sediminicola
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sediminicola
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sediminicola , Complete Genome

Gene Summary

Adenine Count

510747 bp

Thymine Count

512278 bp

Guanine Count

866983 bp

Cytosine Count

866574 bp

Genome Length

2756582 bp

Protein-coding Genes

2791 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii subunit epsilonACMC5O_002562Q1RJM1Negative2465372 - 246607025634.9
dephospho-coa kinaseACMC5O_002563P58100Negative2466078 - 246668321760.4
nucleoside triphosphate pyrophosphataseACMC5O_002564Q2GC58Negative2466715 - 246729321193.5
uroporphyrinogen decarboxylaseACMC5O_002565A5VA70Positive2467641 - 246865436535.0
copd family proteinACMC5O_002566Q53229Positive2468651 - 246910316887.0
transcription termination factor rhoACMC5O_002567P52156Positive2469284 - 247054046220.9
yjbe family putative metal transport proteinACMC5O_002568O31603Positive2470566 - 247122823686.5
yjbe family putative metal transport proteinACMC5O_002569O31603Positive2471312 - 247202825180.4
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeACMC5O_002570Q2N6I9Positive2472056 - 247333645164.6
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgACMC5O_002571Q2GC38Positive2473409 - 247508560925.6

Displaying genes 2561 – 2570 of 2843 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.