Sphingomonas sediminicola

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sediminicola is a rod-shaped bacterium known for its motility, as it possesses flagella. This feature allows the organism to move through its environment, which can be crucial for its survival and interaction with other microorganisms. The species is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various ecological niches. The genome of Sphingomonas sediminicola can be referenced via the accession number CP178916.1, which provides a comprehensive source of genetic information for researchers interested in its biology and potential applications. Understanding the genomic makeup of this organism can facilitate insights into its metabolic capabilities and environmental roles. In ecological terms, the presence of Sphingomonas sediminicola in sediments suggests its involvement in biogeochemical cycles, particularly in the degradation of organic materials. As a member of the Sphingomonad group, it is likely to participate in the breakdown of complex compounds, contributing to nutrient cycling in its habitat. The ability to thrive in sediment environments highlights its potential importance in maintaining ecosystem health and function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sediminicola
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sediminicola
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sediminicola , Complete Genome

Gene Summary

Adenine Count

510747 bp

Thymine Count

512278 bp

Guanine Count

866983 bp

Cytosine Count

866574 bp

Genome Length

2756582 bp

Protein-coding Genes

2791 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1476 domain-containing proteinACMC5O_001612Not AvailableNegative1568849 - 156918112540.8
rna polymerase sigma factorACMC5O_001613O53590Positive1569322 - 156986719815.7
vwa domain-containing proteinACMC5O_001614P76481Positive1569963 - 157167261592.8
hypothetical proteinACMC5O_001615Not AvailablePositive1571790 - 157280035310.7
nadph:quinone oxidoreductase family proteinACMC5O_001616B0BNC9Negative1572801 - 157379935101.4
n-acyl homoserine lactonase family proteinACMC5O_001617A8IQD2Negative1573800 - 157466630548.6
retroviral-like aspartic protease family proteinACMC5O_001618Not AvailableNegative1574688 - 157555429806.9
coa transferase subunit bACMC5O_001619B0RVK3Negative1575551 - 157621023747.7
coa transferase subunit aACMC5O_001620B0RVK4Negative1576210 - 157691725381.6
heme-binding proteinACMC5O_001621Not AvailableNegative1576971 - 157744715749.7

Displaying genes 1611 – 1620 of 2843 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.