Flammeovirga yaeyamensis IR25-3

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Flammeovirgaceae

Genus

Flammeovirga

Description

Flammeovirga yaeyamensis IR25-3 is a Gram-negative, rod-shaped bacterium notable for its genomic structure, which includes two replicons. The organism's genetic information is accessible through the accession numbers CP076132.1 and CP076133.1, which provide detailed insights into its genomic characteristics. The Gram-negative classification indicates that F. yaeyamensis IR25-3 possesses a thin peptidoglycan layer surrounded by an outer membrane, a trait common among many bacteria that contributes to their resilience in various environments. The rod shape of this bacterium may influence its motility and ability to colonize different ecological niches. The presence of two replicons suggests a complex genomic architecture, which could offer advantages in terms of genetic diversity and adaptability. This trait may enable F. yaeyamensis IR25-3 to thrive in diverse habitats, potentially allowing it to utilize various substrates and respond effectively to environmental changes. In summary, the characteristics of Flammeovirga yaeyamensis IR25-3, including its Gram-negative nature, rod shape, and dual-replicon genome, highlight its potential role in microbial ecosystems. Understanding these traits can provide insights into how this bacterium interacts with its environment and contributes to biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga yaeyamensis
StrainIR25-3

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flammeovirga yaeyamensis IR25-3, Complete Genome

Gene Summary

Adenine Count

1702145 bp

Thymine Count

1696599 bp

Guanine Count

899268 bp

Cytosine Count

892998 bp

Genome Length

5191010 bp

Protein-coding Genes

4012 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susd/ragb family nutrient-binding outer membrane lipoproteinKMW28_13455Not AvailableNegative3443576 - 344545368980.4
susc/raga family tonb-linked outer membrane proteinKMW28_13460T2KMI3Negative3445460 - 3448594114086.0
deor/glpr family dna-binding transcription regulatorKMW28_13465Q92ET8Negative3448877 - 344966529300.2
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseKMW28_13470Q11YY5Negative3449878 - 345077133470.7
adenosylmethionine decarboxylaseKMW28_13475Q04NB1Negative3450889 - 345129014999.7
d-alanyl-d-alanine carboxypeptidase family proteinKMW28_13480P77790Positive3451299 - 345203628814.7
hypothetical proteinKMW28_13485Not AvailablePositive3452285 - 345269815915.7
chalcone isomerase family proteinKMW28_13490Not AvailableNegative3452759 - 345331920491.8
atp-binding cassette domain-containing proteinKMW28_13495Q9C8J8Negative3453444 - 3456524119009.0
hypothetical proteinKMW28_13500Not AvailableNegative3456755 - 345766332429.6

Displaying genes 2691 – 2700 of 5262 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.