Flammeovirga yaeyamensis IR25-3

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Flammeovirgaceae

Genus

Flammeovirga

Description

Flammeovirga yaeyamensis IR25-3 is a Gram-negative, rod-shaped bacterium notable for its genomic structure, which includes two replicons. The organism's genetic information is accessible through the accession numbers CP076132.1 and CP076133.1, which provide detailed insights into its genomic characteristics. The Gram-negative classification indicates that F. yaeyamensis IR25-3 possesses a thin peptidoglycan layer surrounded by an outer membrane, a trait common among many bacteria that contributes to their resilience in various environments. The rod shape of this bacterium may influence its motility and ability to colonize different ecological niches. The presence of two replicons suggests a complex genomic architecture, which could offer advantages in terms of genetic diversity and adaptability. This trait may enable F. yaeyamensis IR25-3 to thrive in diverse habitats, potentially allowing it to utilize various substrates and respond effectively to environmental changes. In summary, the characteristics of Flammeovirga yaeyamensis IR25-3, including its Gram-negative nature, rod shape, and dual-replicon genome, highlight its potential role in microbial ecosystems. Understanding these traits can provide insights into how this bacterium interacts with its environment and contributes to biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga yaeyamensis
StrainIR25-3

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flammeovirga yaeyamensis IR25-3, Complete Genome

Gene Summary

Adenine Count

1702145 bp

Thymine Count

1696599 bp

Guanine Count

899268 bp

Cytosine Count

892998 bp

Genome Length

5191010 bp

Protein-coding Genes

4012 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorKMW28_13055Not AvailableNegative3330483 - 333278988841.4
hypothetical proteinKMW28_13060Not AvailablePositive3333116 - 333372122603.2
hypothetical proteinKMW28_13065Not AvailableNegative3333797 - 333415913565.7
2-hydroxyacid dehydrogenaseKMW28_13070P30799Negative3334386 - 333539637460.5
mosc n-terminal beta barrel domain-containing proteinKMW28_13075Not AvailableNegative3335649 - 333642229587.2
hypothetical proteinKMW28_13080Not AvailablePositive3336515 - 333691915867.2
duf1761 family proteinKMW28_13085Not AvailableNegative3337005 - 333741515064.6
sco family proteinKMW28_13090P54178Negative3337452 - 333810225184.0
toxin-antitoxin system ywqk family antitoxinKMW28_13095Not AvailableNegative3338089 - 333859819951.6
yhyh proteinKMW28_13100Not AvailableNegative3338654 - 333947230279.2

Displaying genes 2611 – 2620 of 5262 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.