Flammeovirga yaeyamensis IR25-3

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Flammeovirgaceae

Genus

Flammeovirga

Description

Flammeovirga yaeyamensis IR25-3 is a Gram-negative, rod-shaped bacterium notable for its genomic structure, which includes two replicons. The organism's genetic information is accessible through the accession numbers CP076132.1 and CP076133.1, which provide detailed insights into its genomic characteristics. The Gram-negative classification indicates that F. yaeyamensis IR25-3 possesses a thin peptidoglycan layer surrounded by an outer membrane, a trait common among many bacteria that contributes to their resilience in various environments. The rod shape of this bacterium may influence its motility and ability to colonize different ecological niches. The presence of two replicons suggests a complex genomic architecture, which could offer advantages in terms of genetic diversity and adaptability. This trait may enable F. yaeyamensis IR25-3 to thrive in diverse habitats, potentially allowing it to utilize various substrates and respond effectively to environmental changes. In summary, the characteristics of Flammeovirga yaeyamensis IR25-3, including its Gram-negative nature, rod shape, and dual-replicon genome, highlight its potential role in microbial ecosystems. Understanding these traits can provide insights into how this bacterium interacts with its environment and contributes to biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga yaeyamensis
StrainIR25-3

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flammeovirga yaeyamensis IR25-3, Complete Genome

Gene Summary

Adenine Count

1702145 bp

Thymine Count

1696599 bp

Guanine Count

899268 bp

Cytosine Count

892998 bp

Genome Length

5191010 bp

Protein-coding Genes

4012 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thymidine phosphorylaseKMW28_11055Q99SC3Positive2809066 - 281037046985.6
deoxyribose-phosphate aldolaseKMW28_11060B0S0N1Positive2810502 - 281116723596.0
phosphopentomutaseKMW28_11065Q2RID0Positive2811173 - 281231841746.4
purine-nucleoside phosphorylaseKMW28_11070Q8R973Positive2812320 - 281302725709.6
hypothetical proteinKMW28_11075Not AvailablePositive2813223 - 281372619131.9
transcriptional repressorKMW28_11080A8FKI7Negative2813797 - 281425818370.1
duf3299 domain-containing proteinKMW28_11085Not AvailableNegative2814267 - 281470716901.1
4-hydroxythreonine-4-phosphate dehydrogenase pdxaKMW28_11090Q89ZK3Negative2814712 - 281607050652.2
t9ss type a sorting domain-containing proteinKMW28_11095Not AvailablePositive2816417 - 2819902132112.0
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaKMW28_11100Q11UL8Positive2820026 - 282081129464.8

Displaying genes 2211 – 2220 of 5262 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.