Flammeovirga yaeyamensis IR25-3

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Flammeovirgaceae

Genus

Flammeovirga

Description

Flammeovirga yaeyamensis IR25-3 is a Gram-negative, rod-shaped bacterium notable for its genomic structure, which includes two replicons. The organism's genetic information is accessible through the accession numbers CP076132.1 and CP076133.1, which provide detailed insights into its genomic characteristics. The Gram-negative classification indicates that F. yaeyamensis IR25-3 possesses a thin peptidoglycan layer surrounded by an outer membrane, a trait common among many bacteria that contributes to their resilience in various environments. The rod shape of this bacterium may influence its motility and ability to colonize different ecological niches. The presence of two replicons suggests a complex genomic architecture, which could offer advantages in terms of genetic diversity and adaptability. This trait may enable F. yaeyamensis IR25-3 to thrive in diverse habitats, potentially allowing it to utilize various substrates and respond effectively to environmental changes. In summary, the characteristics of Flammeovirga yaeyamensis IR25-3, including its Gram-negative nature, rod shape, and dual-replicon genome, highlight its potential role in microbial ecosystems. Understanding these traits can provide insights into how this bacterium interacts with its environment and contributes to biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga yaeyamensis
StrainIR25-3

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flammeovirga yaeyamensis IR25-3, Complete Genome

Gene Summary

Adenine Count

1702145 bp

Thymine Count

1696599 bp

Guanine Count

899268 bp

Cytosine Count

892998 bp

Genome Length

5191010 bp

Protein-coding Genes

4012 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (uracil(1939)-c(5))-methyltransferase rlmdKMW28_10605Q8AA22Negative2707487 - 270889654104.9
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseKMW28_10610O66550Negative2708908 - 270940218713.7
bama/tama family outer membrane proteinKMW28_10615Q8K9S5Negative2709430 - 271197998816.2
replicative dna helicaseKMW28_10620P37469Negative2712086 - 271368459161.1
peptidoglycan synthetaseKMW28_10625B9DY44Positive2714051 - 271540950380.2
udp-n-acetylmuramate dehydrogenaseKMW28_10630A5FNG4Positive2715583 - 271658737199.8
potassium channel proteinKMW28_10635Q57604Positive2716666 - 271760135149.7
hypothetical proteinKMW28_10640Not AvailablePositive2717601 - 271825424692.2
c40 family peptidaseKMW28_10645O35010Positive2718255 - 271902829108.6
gmc family oxidoreductaseKMW28_10650P9WMV8Negative2719025 - 272065660374.9

Displaying genes 2121 – 2130 of 5262 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.