Flammeovirga yaeyamensis IR25-3

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Flammeovirgaceae

Genus

Flammeovirga

Description

Flammeovirga yaeyamensis IR25-3 is a Gram-negative, rod-shaped bacterium notable for its genomic structure, which includes two replicons. The organism's genetic information is accessible through the accession numbers CP076132.1 and CP076133.1, which provide detailed insights into its genomic characteristics. The Gram-negative classification indicates that F. yaeyamensis IR25-3 possesses a thin peptidoglycan layer surrounded by an outer membrane, a trait common among many bacteria that contributes to their resilience in various environments. The rod shape of this bacterium may influence its motility and ability to colonize different ecological niches. The presence of two replicons suggests a complex genomic architecture, which could offer advantages in terms of genetic diversity and adaptability. This trait may enable F. yaeyamensis IR25-3 to thrive in diverse habitats, potentially allowing it to utilize various substrates and respond effectively to environmental changes. In summary, the characteristics of Flammeovirga yaeyamensis IR25-3, including its Gram-negative nature, rod shape, and dual-replicon genome, highlight its potential role in microbial ecosystems. Understanding these traits can provide insights into how this bacterium interacts with its environment and contributes to biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyFlammeovirgaceae
GenusFlammeovirga
SpeciesFlammeovirga yaeyamensis
StrainIR25-3

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flammeovirga yaeyamensis IR25-3, Complete Genome

Gene Summary

Adenine Count

1702145 bp

Thymine Count

1696599 bp

Guanine Count

899268 bp

Cytosine Count

892998 bp

Genome Length

5191010 bp

Protein-coding Genes

4012 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleoside 2-deoxyribosyltransferaseKMW28_05155Not AvailableNegative1338854 - 133924615200.2
zinc-dependent peptidaseKMW28_05160P73079Negative1339268 - 134018835744.3
dna (cytosine-5-)-methyltransferaseKMW28_05165P05102Positive1340742 - 134170436052.3
hypothetical proteinKMW28_05170Not AvailablePositive1341862 - 134229016052.2
tonb-dependent receptorKMW28_05175T2KMI3Positive1342383 - 1345073101822.0
duf4249 domain-containing proteinKMW28_05180Not AvailablePositive1345075 - 134586629892.8
pirin family proteinKMW28_05185P46852Negative1345957 - 134667326977.4
arac family transcriptional regulatorKMW28_05190P54722Negative1346783 - 134764032678.9
pas domain s-box proteinKMW28_05195Q9LCC2Negative1347695 - 134880742402.3
pas domain-containing proteinKMW28_05200Q55168Negative1348961 - 135011544599.4

Displaying genes 1031 – 1040 of 5262 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.