Bordetella holmesii 5589, F5101

microaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Bordetella

Description

Bordetella holmesii 5589, F5101 is a microaerophilic bacterium, which indicates that it thrives in environments with reduced oxygen levels. This characteristic is essential for its survival and growth, as it requires specific oxygen concentrations that are lower than those found in the atmosphere. The presence of true flagella suggests that B. holmesii 5589, F5101 is motile, enabling it to navigate its environment, which may be beneficial for colonization and interaction with host organisms. Genomic analysis reveals that B. holmesii 5589, F5101 has three replicons, indicating a complex genetic structure that may contribute to its adaptability and potential pathogenicity. The accession numbers associated with this strain—CP007494.1, CP182515.1, and CP085973.1—provide references for further genomic studies and insights into its genetic makeup. The microaerophilic nature and motility of B. holmesii 5589, F5101 suggest its ecological role in niche environments, potentially within host organisms where oxygen levels are limited. Understanding these traits can enhance our knowledge of its behavior and interactions in microbial ecosystems and its implications in human health, particularly considering that Bordetella species are often associated with respiratory infections. Further research on this bacterium may uncover its pathogenic mechanisms and contribute to the development of targeted treatments or preventive measures.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusBordetella
SpeciesBordetella holmesii
Strain5589, F5101

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bordetella holmesii 5589, F5101, Complete Genome

Gene Summary

Adenine Count

688505 bp

Thymine Count

691897 bp

Guanine Count

1157119 bp

Cytosine Count

1162153 bp

Genome Length

3699674 bp

Protein-coding Genes

3912 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-serNot AvailableNot AvailablePositive56537 - 56629Not Available
aspartate kinase, monofunctional classD560_0063O69077Negative56724 - 5798344812.1
trna(ile)-lysidine synthetaseD560_0064Q7VX92Negative58068 - 5905435662.7
acetyl-coa carboxylase, carboxyl transferase, alpha subunitD560_0065Q2KX40Negative59135 - 6010035706.1
hhh-gpd superbase excision dna repair family proteinD560_0066Q92383Negative60134 - 6077824351.4
cysteine--trna ligaseD560_0067Q2KX38Negative60789 - 6224654008.7
tpr repeat family proteinD560_0068Not AvailablePositive62447 - 6312724865.9
cyclophilin type peptidyl-prolyl cis-trans isomerase/cld family proteinD560_0069P23869Positive63259 - 6376518452.8
udp-2,3-diacylglucosamine hydrolaseD560_0070Q7VX99Positive63758 - 6452828159.4
undecaprenyl-diphosphatase upppD560_0071A9HXK3Negative64639 - 6550231310.8

Displaying genes 61 – 70 of 11230 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.