Bordetella holmesii 5589, F5101

microaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Bordetella

Description

Bordetella holmesii 5589, F5101 is a microaerophilic bacterium, which indicates that it thrives in environments with reduced oxygen levels. This characteristic is essential for its survival and growth, as it requires specific oxygen concentrations that are lower than those found in the atmosphere. The presence of true flagella suggests that B. holmesii 5589, F5101 is motile, enabling it to navigate its environment, which may be beneficial for colonization and interaction with host organisms. Genomic analysis reveals that B. holmesii 5589, F5101 has three replicons, indicating a complex genetic structure that may contribute to its adaptability and potential pathogenicity. The accession numbers associated with this strain—CP007494.1, CP182515.1, and CP085973.1—provide references for further genomic studies and insights into its genetic makeup. The microaerophilic nature and motility of B. holmesii 5589, F5101 suggest its ecological role in niche environments, potentially within host organisms where oxygen levels are limited. Understanding these traits can enhance our knowledge of its behavior and interactions in microbial ecosystems and its implications in human health, particularly considering that Bordetella species are often associated with respiratory infections. Further research on this bacterium may uncover its pathogenic mechanisms and contribute to the development of targeted treatments or preventive measures.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusBordetella
SpeciesBordetella holmesii
Strain5589, F5101

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bordetella holmesii 5589, F5101, Complete Genome

Gene Summary

Adenine Count

688505 bp

Thymine Count

691897 bp

Guanine Count

1157119 bp

Cytosine Count

1162153 bp

Genome Length

3699674 bp

Protein-coding Genes

3912 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integrase core domain proteinD560_3404P24577Negative3157815 - 31580458874.46
integrase core domain proteinD560_3405P24577Negative3158075 - 315863821260.9
tripartite tricarboxylate transporter receptor family proteinD560_3406P27103Positive3158848 - 315972031007.4
d-isomer specific 2-hydroxyacid dehydrogenase, nad binding domain proteinD560_3407Q2VEQ7Positive3159704 - 316033322938.7
d-isomer specific 2-hydroxyacid dehydrogenase, nad binding domain proteinD560_3408Q2VEQ7Positive3160300 - 316068313861.8
rna polymerase sigma factor, sigma-70 family proteinD560_3409P23484Positive3160826 - 316132018211.1
fecr family proteinD560_3410P23485Positive3161322 - 316223933474.9
tonb-dependent receptor plug domain proteinD560_3411Q9Z3Q5Positive3162319 - 316350341959.9
integrase core domain proteinD560_3412P37007Negative3163494 - 316444435762.0
tonb dependent receptor family proteinD560_3413Q6U607Positive3164475 - 316588152739.3

Displaying genes 3401 – 3410 of 11230 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.