Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Alcaligenaceae
Genus
Bordetella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Alcaligenaceae |
| Genus | Bordetella |
| Species | Bordetella holmesii |
| Strain | 5589, F5101 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | microaerophile |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
688505 bp
Thymine Count
691897 bp
Guanine Count
1157119 bp
Cytosine Count
1162153 bp
Genome Length
3699674 bp
Protein-coding Genes
3912 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase core domain protein | D560_3404 | P24577 | Negative | 3157815 - 3158045 | 8874.46 |
| integrase core domain protein | D560_3405 | P24577 | Negative | 3158075 - 3158638 | 21260.9 |
| tripartite tricarboxylate transporter receptor family protein | D560_3406 | P27103 | Positive | 3158848 - 3159720 | 31007.4 |
| d-isomer specific 2-hydroxyacid dehydrogenase, nad binding domain protein | D560_3407 | Q2VEQ7 | Positive | 3159704 - 3160333 | 22938.7 |
| d-isomer specific 2-hydroxyacid dehydrogenase, nad binding domain protein | D560_3408 | Q2VEQ7 | Positive | 3160300 - 3160683 | 13861.8 |
| rna polymerase sigma factor, sigma-70 family protein | D560_3409 | P23484 | Positive | 3160826 - 3161320 | 18211.1 |
| fecr family protein | D560_3410 | P23485 | Positive | 3161322 - 3162239 | 33474.9 |
| tonb-dependent receptor plug domain protein | D560_3411 | Q9Z3Q5 | Positive | 3162319 - 3163503 | 41959.9 |
| integrase core domain protein | D560_3412 | P37007 | Negative | 3163494 - 3164444 | 35762.0 |
| tonb dependent receptor family protein | D560_3413 | Q6U607 | Positive | 3164475 - 3165881 | 52739.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.




