Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Alcaligenaceae
Genus
Bordetella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Alcaligenaceae |
| Genus | Bordetella |
| Species | Bordetella holmesii |
| Strain | 5589, F5101 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | microaerophile |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
688505 bp
Thymine Count
691897 bp
Guanine Count
1157119 bp
Cytosine Count
1162153 bp
Genome Length
3699674 bp
Protein-coding Genes
3912 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyltransferase family protein | D560_3314 | Q18B70 | Positive | 3074534 - 3074998 | 17528.1 |
| ppic-type ppiase domain protein | D560_3315 | P0A9L7 | Negative | 3075072 - 3075353 | 10024.7 |
| phage integrase family protein | D560_3316 | O50655 | Negative | 3075470 - 3076453 | 35673.0 |
| plasmid replication region family protein | D560_3317 | P29770 | Positive | 3076697 - 3077695 | 35921.1 |
| tonb family c-terminal domain protein | D560_3318 | O52042 | Positive | 3077908 - 3078228 | 12111.8 |
| d-isomer specific 2-hydroxyacid dehydrogenase, nad binding domain protein | D560_3319 | Q9X1C1 | Positive | 3078293 - 3079204 | 32480.3 |
| diguanylate cyclase domain protein | D560_3320 | Q9I310 | Positive | 3079337 - 3081418 | 74042.8 |
| fumarylacetoacetate (faa) hydrolase family protein | D560_3321 | Q8R0F8 | Negative | 3081457 - 3082161 | 25076.8 |
| bacterial regulatory helix-turn-helix s, arac family protein | D560_3322 | P32677 | Negative | 3082254 - 3083138 | 33318.2 |
| hypothetical protein | D560_3323 | Not Available | Negative | 3083213 - 3083563 | 12771.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.




