Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Alcaligenaceae
Genus
Bordetella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Alcaligenaceae |
| Genus | Bordetella |
| Species | Bordetella holmesii |
| Strain | 5589, F5101 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | microaerophile |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
688505 bp
Thymine Count
691897 bp
Guanine Count
1157119 bp
Cytosine Count
1162153 bp
Genome Length
3699674 bp
Protein-coding Genes
3912 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a 3-o-deacylase family protein | D560_2294 | Q7WD07 | Positive | 2144078 - 2144623 | 20114.5 |
| integrase core domain protein | D560_2295 | P24577 | Positive | 2145093 - 2145656 | 21202.9 |
| integrase core domain protein | D560_2296 | P24577 | Positive | 2145686 - 2145916 | 8874.46 |
| ribonuclease, rne/rng family domain protein | D560_2297 | P44443 | Negative | 2146003 - 2149134 | 112296.0 |
| pseudouridine synthase, rlua family protein | D560_2298 | P59835 | Positive | 2149714 - 2150619 | 33474.6 |
| had hydrolase, ia, variant 1 family protein | D560_2299 | Q6CZR3 | Positive | 2150621 - 2151277 | 23660.6 |
| oxidoreductase molybdopterin binding domain protein | D560_2300 | Q60AK7 | Positive | 2151395 - 2152354 | 35958.3 |
| ferric reductase like transmembrane component family protein | D560_2301 | Q7VSE8 | Positive | 2152535 - 2152993 | 17681.2 |
| n-acetylmuramoyl-l-alanine amidase family protein | D560_2302 | P75820 | Negative | 2152974 - 2153756 | 28891.2 |
| tetrapyrrole (corrin/porphyrin) methylases family protein | D560_2303 | Q87B70 | Negative | 2153760 - 2154470 | 25908.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.




