Bordetella holmesii 5589, F5101

microaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Alcaligenaceae

Genus

Bordetella

Description

Bordetella holmesii 5589, F5101 is a microaerophilic bacterium, which indicates that it thrives in environments with reduced oxygen levels. This characteristic is essential for its survival and growth, as it requires specific oxygen concentrations that are lower than those found in the atmosphere. The presence of true flagella suggests that B. holmesii 5589, F5101 is motile, enabling it to navigate its environment, which may be beneficial for colonization and interaction with host organisms. Genomic analysis reveals that B. holmesii 5589, F5101 has three replicons, indicating a complex genetic structure that may contribute to its adaptability and potential pathogenicity. The accession numbers associated with this strain—CP007494.1, CP182515.1, and CP085973.1—provide references for further genomic studies and insights into its genetic makeup. The microaerophilic nature and motility of B. holmesii 5589, F5101 suggest its ecological role in niche environments, potentially within host organisms where oxygen levels are limited. Understanding these traits can enhance our knowledge of its behavior and interactions in microbial ecosystems and its implications in human health, particularly considering that Bordetella species are often associated with respiratory infections. Further research on this bacterium may uncover its pathogenic mechanisms and contribute to the development of targeted treatments or preventive measures.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyAlcaligenaceae
GenusBordetella
SpeciesBordetella holmesii
Strain5589, F5101

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bordetella holmesii 5589, F5101, Complete Genome

Gene Summary

Adenine Count

688505 bp

Thymine Count

691897 bp

Guanine Count

1157119 bp

Cytosine Count

1162153 bp

Genome Length

3699674 bp

Protein-coding Genes

3912 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseD560_1973Q2KUU3Negative1852035 - 185290430114.1
tonb family c-terminal domain proteinD560_1974Not AvailableNegative1852901 - 185374329963.6
rnb domain proteinD560_1975P73177Negative1853818 - 185569869381.8
alpha/beta hydrolase family proteinD560_1976P0A8Z9Negative1855746 - 185636022478.9
l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligaseD560_1977P37773Negative1856357 - 185772748518.2
ahpc/tsa family proteinD560_1978A4IQF5Positive1857801 - 185834318921.2
3-dehydroquinate dehydratase, type iiD560_1979Q2KUV4Positive1858419 - 185885315489.5
acetyl-coa carboxylase, biotin carboxyl carrier proteinD560_1980P37799Positive1858944 - 185939015433.8
acetyl-coa carboxylase, biotin carboxylase subunitD560_1981O52058Positive1859400 - 186074649701.8
ribosomal protein l11 methyltransferaseD560_1982Q7WF92Positive1860837 - 186174532431.3

Displaying genes 1971 – 1980 of 11230 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.