Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Alcaligenaceae
Genus
Bordetella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Alcaligenaceae |
| Genus | Bordetella |
| Species | Bordetella holmesii |
| Strain | 5589, F5101 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | microaerophile |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
688505 bp
Thymine Count
691897 bp
Guanine Count
1157119 bp
Cytosine Count
1162153 bp
Genome Length
3699674 bp
Protein-coding Genes
3912 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoadipate enol-lactonase | D560_1073 | P00632 | Negative | 1009457 - 1010131 | 24970.6 |
| ycii-related domain protein | D560_1074 | Not Available | Negative | 1010271 - 1010567 | 11115.2 |
| muconolactone delta-isomerase | D560_1075 | P80573 | Negative | 1010582 - 1010857 | 10484.7 |
| 3-oxoacid coa-transferase, b subunit | D560_1076 | P0A101 | Negative | 1010925 - 1011569 | 22654.4 |
| beta-ketoadipate pathway transcriptional regulator, pcar/pcau/pobr family protein | D560_1077 | Q52154 | Positive | 1011852 - 1012637 | 28506.7 |
| short chain dehydrogenase family protein | D560_1078 | Q9KJF1 | Negative | 1012675 - 1013400 | 24765.9 |
| short chain fatty acid transporter family protein | D560_1079 | P76460 | Negative | 1013414 - 1014754 | 47858.8 |
| nad-dependent glycerol-3-phosphate dehydrogenase family protein | D560_1080 | P52041 | Negative | 1014849 - 1015781 | 33397.3 |
| autotransporter beta-domain protein | D560_1081 | E6MVD9 | Negative | 1016010 - 1018781 | 97773.1 |
| phosphoenolpyruvate carboxylase family protein | D560_1082 | Q7WQB3 | Negative | 1019220 - 1021985 | 101878.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.




