Mycobacterium phocaicum N4

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycolicibacterium

Description

Mycobacterium phocaicum N4 is a rod-shaped bacterium primarily found in intertidal sediments. This organism is notable for possessing true flagella, which may contribute to its motility in the sediment environment. Mycobacterium phocaicum N4 has a single replicon, reflecting a streamlined genomic structure, which could be advantageous for its adaptation to specific ecological niches. The habitat of intertidal sediments suggests that Mycobacterium phocaicum N4 may play a role in the biogeochemical cycling of nutrients in these dynamic environments. The presence of true flagella indicates potential motility, enabling the bacterium to navigate through sediment layers, which could facilitate interactions with other microorganisms and organic matter. Such interactions may be critical for nutrient exchange and the overall health of sediment ecosystems. The genomic information for Mycobacterium phocaicum N4 is cataloged under accession number AP022616.1, providing a resource for further research into its genetic and metabolic capabilities. Understanding this bacterium's ecological role could contribute to insights into the microbial diversity and functionality within intertidal zones, highlighting its potential importance in marine ecosystem processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycolicibacterium
SpeciesMycolicibacterium phocaicum
StrainN4

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatintertidal sediments
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mycobacterium phocaicum N4, Complete Genome

Gene Summary

Adenine Count

966858 bp

Thymine Count

961547 bp

Guanine Count

1958844 bp

Cytosine Count

1965948 bp

Genome Length

5853197 bp

Protein-coding Genes

5691 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
long-chain-fatty-acid--coa ligaseMPHO_33900O07610Positive3500315 - 350181752958.9
class ii poly(r)-hydroxyalkanoic acid synthaseMPHO_33910P26494Positive3501900 - 350350457864.0
poly(3-hydroxyalkanoic acid) depolymeraseMPHO_33920P26495Positive3503501 - 350431629032.5
hypothetical proteinMPHO_33930Not AvailableNegative3504469 - 350482513121.2
membrane proteinMPHO_33940Q9P6J2Negative3505097 - 350581023642.7
llm class f420-dependent oxidoreductaseMPHO_33950Q58929Negative3505872 - 350683734464.7
c4-dicarboxylate abc transporterMPHO_33960Q57996Positive3506871 - 350798639020.6
hypothetical proteinMPHO_33970P9WL10Positive3507983 - 350830612138.5
hypothetical proteinMPHO_33980P44558Negative3508323 - 350879917700.2
short-chain dehydrogenase/reductaseMPHO_33990A6SSW9Negative3508808 - 350968030509.2

Displaying genes 3441 – 3450 of 5758 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.