Pectobacterium atrosepticum G/39, G39

RodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium atrosepticum G/39, also referred to as G39, is a Gram-negative, anaerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This mesophilic organism thrives optimally at a temperature of 27°C and can grow within a specific temperature range suitable for mesophiles. Notably, G39 possesses two replicons, indicating a complex genetic architecture. Pectobacterium atrosepticum is known for its free-living biotic relationship, primarily affecting a variety of host plants. These include Solanum tuberosum (potato), Daucus carota (carrot), Beta vulgaris subsp. vulgaris (beet), Cynara cardunculus var. scolymus (globe artichoke), and Cichorium intybus (endive). The bacterium is associated with soft rot, a significant plant disease that leads to tissue decay and economic losses in agricultural practices. The presence of G39 in such a diverse range of hosts underscores its ecological versatility and potential impact on crop health and yield. Understanding the traits of Pectobacterium atrosepticum, particularly its pathogenicity and environmental adaptability, is crucial for developing effective management strategies against soft rot in affected crops. The accessions CP036163.1 and CP036162.1 provide valuable genomic resources for further research into its biology and interactions with host plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium atrosepticum
StrainG/39, G39

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pectobacterium atrosepticum G/39, G39
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature27
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityPlant

Genome Summary

Pectobacterium atrosepticum G/39, G39, Complete Genome

Gene Summary

Adenine Count

1203999 bp

Thymine Count

1202297 bp

Guanine Count

1258344 bp

Cytosine Count

1258759 bp

Genome Length

4923399 bp

Protein-coding Genes

4302 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad-dependent protein deacylaseDCX48_04640Q8ZFR1Negative893529 - 89435931596.7
n-acetylglucosamine kinaseDCX48_04645Q6D662Negative894371 - 89528233011.0
lipoprotein-releasing abc transporter permease subunit loleDCX48_04650P75958Negative895367 - 89661445120.8
lipoprotein-releasing abc transporter atp-binding protein loldDCX48_04655Q6D664Negative896611 - 89731825498.6
lipoprotein-releasing abc transporter permease subunit lolcDCX48_04660P0ADC5Negative897311 - 89851343193.3
transcription-repair coupling factorDCX48_04665P30958Positive898653 - 902102130289.0
molecular chaperoneDCX48_04670P36928Positive902334 - 90368649983.8
tetr/acrr family transcriptional regulatorDCX48_04675Q9KJC4Negative903738 - 90432821660.8
mfs transporterDCX48_04680P55647Positive904464 - 90567241921.6
mfs transporterDCX48_04685Q5PC58Positive905709 - 90690540629.4

Displaying genes 891 – 900 of 4578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725

Displaying health effects 1 – 1 of 1 in total