Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase 4 subunit b | DCX48_19870 | P23482 | Negative | 4237497 - 4239512 | 72320.0 |
| 4fe-4s dicluster domain-containing protein | DCX48_19875 | P23481 | Negative | 4239515 - 4240135 | 21909.6 |
| electron transport protein hydn | DCX48_19880 | P0AAK6 | Positive | 4240677 - 4241222 | 19960.3 |
| formate dehydrogenase subunit alpha | DCX48_19885 | P07658 | Positive | 4241279 - 4243429 | 79443.8 |
| carbamoyltransferase hypf | DCX48_19890 | P30131 | Positive | 4243453 - 4245729 | 82186.5 |
| hoxn/hupn/nixa family nickel/cobalt transporter | DCX48_19895 | P23516 | Positive | 4245695 - 4246717 | 36978.8 |
| phosphoribosylglycinamide formyltransferase | DCX48_19900 | P08179 | Negative | 4246934 - 4247569 | 23205.7 |
| phosphoribosylformylglycinamidine cyclo-ligase | DCX48_19905 | Q6D7S1 | Negative | 4247569 - 4248606 | 36838.1 |
| uracil phosphoribosyltransferase | DCX48_19910 | Q6D7S0 | Positive | 4248960 - 4249586 | 22497.7 |
| uracil permease | DCX48_19915 | P0AGM8 | Positive | 4249803 - 4251092 | 44973.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
