Pectobacterium atrosepticum G/39, G39

RodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium atrosepticum G/39, also referred to as G39, is a Gram-negative, anaerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This mesophilic organism thrives optimally at a temperature of 27°C and can grow within a specific temperature range suitable for mesophiles. Notably, G39 possesses two replicons, indicating a complex genetic architecture. Pectobacterium atrosepticum is known for its free-living biotic relationship, primarily affecting a variety of host plants. These include Solanum tuberosum (potato), Daucus carota (carrot), Beta vulgaris subsp. vulgaris (beet), Cynara cardunculus var. scolymus (globe artichoke), and Cichorium intybus (endive). The bacterium is associated with soft rot, a significant plant disease that leads to tissue decay and economic losses in agricultural practices. The presence of G39 in such a diverse range of hosts underscores its ecological versatility and potential impact on crop health and yield. Understanding the traits of Pectobacterium atrosepticum, particularly its pathogenicity and environmental adaptability, is crucial for developing effective management strategies against soft rot in affected crops. The accessions CP036163.1 and CP036162.1 provide valuable genomic resources for further research into its biology and interactions with host plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium atrosepticum
StrainG/39, G39

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pectobacterium atrosepticum G/39, G39
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature27
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityPlant

Genome Summary

Pectobacterium atrosepticum G/39, G39, Complete Genome

Gene Summary

Adenine Count

1203999 bp

Thymine Count

1202297 bp

Guanine Count

1258344 bp

Cytosine Count

1258759 bp

Genome Length

4923399 bp

Protein-coding Genes

4302 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeDCX48_17165Q9WZY4Positive3632289 - 363356945603.3
l,d-transpeptidaseDCX48_17170P0AAY0Negative3633632 - 363472339149.7
deaminated glutathione amidaseDCX48_17175P58054Negative3634905 - 363570228870.1
cytochrome b561DCX48_17180P0ABE5Negative3635724 - 363626020029.1
pyruvate:ferredoxin (flavodoxin) oxidoreductaseDCX48_17185P52647Negative3636534 - 3640067129445.0
hypothetical proteinDCX48_17190Not AvailablePositive3640457 - 364088215245.3
integraseDCX48_17195Not AvailableNegative3640966 - 36411918208.82
gnat family n-acetyltransferaseDCX48_17200Q7PCJ8Positive3641242 - 364173918597.2
lyse family translocatorDCX48_17205Q9KVK7Negative3641783 - 364240922300.7
abc transporter substrate-binding proteinDCX48_17210P0AEU2Negative3642606 - 364338828765.7

Displaying genes 3331 – 3340 of 4578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725

Displaying health effects 1 – 1 of 1 in total