Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter substrate-binding protein | DCX48_01790 | O31518 | Negative | 261215 - 262504 | 48143.5 |
| abc transporter atp-binding protein | DCX48_01795 | P94360 | Negative | 262520 - 263647 | 42010.2 |
| carbohydrate abc transporter permease | DCX48_01800 | O31520 | Negative | 263661 - 264566 | 34245.6 |
| sugar abc transporter permease | DCX48_01805 | O31519 | Negative | 264559 - 265449 | 33421.1 |
| pectate lyase | DCX48_01810 | Q05526 | Negative | 265497 - 267128 | 62335.2 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdud | DCX48_01815 | Q05528 | Negative | 267403 - 268164 | 27188.8 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DCX48_01820 | Q05529 | Negative | 268246 - 269082 | 31123.0 |
| cupin domain-containing protein | DCX48_01825 | Q05527 | Positive | 269448 - 269780 | 12500.0 |
| hexitol phosphatase hxpb | DCX48_01830 | P77247 | Negative | 269871 - 270536 | 24759.0 |
| hypothetical protein | DCX48_01835 | Q56956 | Positive | 270836 - 271384 | 20663.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
