Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l1 | DCX48_14715 | Q6DAN3 | Positive | 3088848 - 3089552 | 24783.1 |
| 50s ribosomal protein l10 | DCX48_14720 | Q6DAN2 | Positive | 3089870 - 3090367 | 17771.7 |
| 50s ribosomal protein l7/l12 | DCX48_14725 | Q6DAN1 | Positive | 3090434 - 3090799 | 12432.0 |
| dna-directed rna polymerase subunit beta | DCX48_14730 | Q6DAN0 | Positive | 3091128 - 3095156 | 150623.0 |
| dna-directed rna polymerase subunit beta' | DCX48_14735 | Q6DAM9 | Positive | 3095298 - 3099521 | 155429.0 |
| shikimate transporter | DCX48_14740 | P76350 | Positive | 3099834 - 3101231 | 50258.5 |
| duf1127 domain-containing protein | DCX48_14745 | P39390 | Negative | 3101302 - 3101493 | 7806.6 |
| plp-dependent aminotransferase family protein | DCX48_14750 | P39389 | Positive | 3101667 - 3103082 | 53036.4 |
| 2-iminoacetate synthase thih | DCX48_14755 | P30140 | Negative | 3103824 - 3104945 | 42681.0 |
| thiazole synthase | DCX48_14760 | Q6DAM4 | Negative | 3104942 - 3105727 | 27401.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
