Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | DCX48_14365 | P25740 | Negative | 3017880 - 3019001 | 42452.8 |
| lipopolysaccharide core heptosyltransferase rfaq | DCX48_14370 | P25742 | Negative | 3019022 - 3020083 | 40606.2 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | DCX48_14375 | P40819 | Positive | 3020588 - 3020812 | 8313.19 |
| type ii toxin-antitoxin system death-on-curing family toxin | DCX48_14380 | Q06259 | Positive | 3020809 - 3021183 | 13577.2 |
| o-antigen ligase domain-containing protein | DCX48_14385 | P27243 | Negative | 3021215 - 3022504 | 47853.3 |
| lipopolysaccharide heptosyltransferase rfac | DCX48_14390 | P24173 | Negative | 3022501 - 3023484 | 36836.4 |
| adp-heptose--lps heptosyltransferase rfaf | DCX48_14395 | P37421 | Negative | 3023481 - 3024530 | 38693.9 |
| adp-glyceromanno-heptose 6-epimerase | DCX48_14400 | C6DIA9 | Negative | 3024554 - 3025486 | 34754.5 |
| glycine c-acetyltransferase | DCX48_14405 | P0AB78 | Positive | 3025729 - 3026925 | 43367.1 |
| l-threonine 3-dehydrogenase | DCX48_14410 | C6DIA7 | Positive | 3026936 - 3027967 | 37566.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
