Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l33 | DCX48_14315 | Q6DAV5 | Positive | 3008915 - 3009082 | 6357.91 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | DCX48_14320 | C6DIB8 | Positive | 3009297 - 3010106 | 30245.3 |
| glycosyltransferase | DCX48_14325 | P11290 | Positive | 3010164 - 3011153 | 37400.8 |
| pantetheine-phosphate adenylyltransferase | DCX48_14330 | C6DIB6 | Negative | 3011159 - 3011647 | 17954.7 |
| 3-deoxy-d-manno-octulosonic acid transferase | DCX48_14335 | P0AC77 | Negative | 3011687 - 3012964 | 47957.7 |
| lipopolysaccharide biosynthesis protein | DCX48_14340 | P27126 | Negative | 3013023 - 3013967 | 37580.8 |
| sugar glycosyltransferase | DCX48_14345 | Not Available | Negative | 3013990 - 3014910 | 35954.7 |
| lipopolysaccharide 3-alpha-galactosyltransferase | DCX48_14350 | P19816 | Negative | 3014910 - 3015935 | 39667.4 |
| lipopolysaccharide 1,6-galactosyltransferase | DCX48_14355 | P27127 | Negative | 3015954 - 3017048 | 40754.6 |
| lipopolysaccharide core heptose(i) kinase rfap | DCX48_14360 | Q9R9D6 | Negative | 3017070 - 3017870 | 31472.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
