Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inositol phosphorylceramide synthase | DCX48_14115 | P76093 | Positive | 2974375 - 2975025 | 24089.0 |
| sterol desaturase family protein | DCX48_14120 | Q6NYE4 | Positive | 2975030 - 2976145 | 42366.3 |
| acyl-coa desaturase | DCX48_14125 | A9SIZ6 | Positive | 2976148 - 2977287 | 43942.9 |
| acyl-coa desaturase | DCX48_14130 | Q08871 | Positive | 2977287 - 2978378 | 41988.4 |
| integrase | DCX48_14135 | Not Available | Negative | 2978441 - 2978716 | 10634.8 |
| ribbon-helix-helix protein, copg family | DCX48_14140 | Not Available | Negative | 2978716 - 2978997 | 10248.3 |
| aldehyde dehydrogenase | DCX48_14145 | P25553 | Positive | 2979505 - 2980944 | 51789.1 |
| alpha-hydroxy-acid oxidizing protein | DCX48_14150 | Q6DAY3 | Positive | 2981125 - 2982285 | 41736.5 |
| ai-2e family transporter | DCX48_14155 | O66948 | Positive | 2982423 - 2983607 | 43225.9 |
| duf596 domain-containing protein | DCX48_14160 | Not Available | Negative | 2983657 - 2984019 | 13765.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
