Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| superoxide dismutase | DCX48_14015 | P53655 | Negative | 2950675 - 2951301 | 23055.1 |
| formate dehydrogenase accessory sulfurtransferase fdhd | DCX48_14020 | Q6DB09 | Negative | 2951561 - 2952394 | 29849.8 |
| aldehyde dehydrogenase | DCX48_14025 | P37685 | Positive | 2952665 - 2954200 | 55983.2 |
| acyltransferase | DCX48_14030 | P37669 | Positive | 2954390 - 2955382 | 36967.3 |
| xylulokinase | DCX48_14035 | P09099 | Negative | 2955413 - 2956870 | 52816.1 |
| xylose isomerase | DCX48_14040 | Q6DB05 | Negative | 2956937 - 2958256 | 49372.0 |
| d-xylose abc transporter substrate-binding protein | DCX48_14045 | P37387 | Positive | 2958735 - 2959730 | 35550.9 |
| xylose abc transporter atp-binding protein | DCX48_14050 | Q6DB03 | Positive | 2959866 - 2961407 | 56867.4 |
| sugar abc transporter permease | DCX48_14055 | P0AGI6 | Positive | 2961385 - 2962566 | 41454.9 |
| xylose operon transcription regulator xylr | DCX48_14060 | P0ACI5 | Positive | 2962703 - 2963881 | 44757.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
