Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrogen assimilation transcriptional regulator | DCX48_13365 | Q08597 | Negative | 2803291 - 2804214 | 33764.5 |
| pyridoxal phosphate-dependent aminotransferase | DCX48_13370 | Q02635 | Positive | 2804561 - 2805763 | 43373.1 |
| lamb/ycsf family protein | DCX48_13375 | Q6CYM1 | Negative | 2805833 - 2806606 | 27613.4 |
| biotin-dependent carboxyltransferase family protein | DCX48_13380 | P75745 | Negative | 2806606 - 2807598 | 35935.7 |
| 5-oxoprolinase subunit pxpb | DCX48_13385 | P0AAV5 | Negative | 2807595 - 2808296 | 25495.7 |
| transporter substrate-binding domain-containing protein | DCX48_13390 | O34563 | Negative | 2808300 - 2809139 | 30254.8 |
| dmt family transporter | DCX48_13395 | Q9KKU0 | Positive | 2809401 - 2810318 | 33048.5 |
| beta-ketoacyl-acp synthase | DCX48_13400 | P0AAI7 | Negative | 2810453 - 2811679 | 43869.8 |
| 3-oxoacyl-acp reductase fabg | DCX48_13405 | P70720 | Negative | 2811679 - 2812410 | 26006.6 |
| 3-hydroxy-fatty acyl-acp dehydratase | DCX48_13410 | P64110 | Negative | 2812449 - 2812931 | 17631.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
