Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chromosomal replication initiator protein dnaa | DCX48_13165 | Q6CYR4 | Negative | 2761561 - 2762958 | 52891.3 |
| 50s ribosomal protein l34 | DCX48_13170 | Q6CYR2 | Positive | 2763632 - 2763772 | 5396.74 |
| ribonuclease p protein component | DCX48_13175 | Q6CYR1 | Positive | 2763791 - 2764150 | 13898.2 |
| membrane protein insertion efficiency factor yidd | DCX48_13180 | Q1C0B5 | Positive | 2764114 - 2764371 | 9486.77 |
| membrane protein insertase yidc | DCX48_13185 | Q6CYR0 | Positive | 2764374 - 2766008 | 60760.7 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | DCX48_13190 | Q6CYQ9 | Positive | 2766138 - 2767502 | 49158.6 |
| hypothetical protein | DCX48_13195 | Not Available | Positive | 2767571 - 2768137 | 21425.1 |
| hnh endonuclease | DCX48_13200 | P50191 | Positive | 2768322 - 2769218 | 34623.3 |
| sdr family oxidoreductase | DCX48_13205 | P39315 | Negative | 2769283 - 2770134 | 29348.1 |
| transcriptional regulator | DCX48_13210 | P0ACN2 | Positive | 2770235 - 2770654 | 15492.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
