Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hcp family type vi secretion system effector | DCX48_12115 | Q9HI36 | Positive | 2537944 - 2538462 | 19093.5 |
| type vi secretion system tip protein vgrg | DCX48_12120 | E0SAL0 | Positive | 2538584 - 2540413 | 67058.6 |
| duf1795 domain-containing protein | DCX48_12125 | Q9I738 | Positive | 2540442 - 2540888 | 16079.0 |
| integrase | DCX48_12130 | E0SIS2 | Positive | 2540881 - 2544795 | 147159.0 |
| hypothetical protein | DCX48_12135 | Not Available | Positive | 2545174 - 2545476 | 11533.9 |
| type i toxin-antitoxin system syme family toxin | DCX48_12140 | C4ZT30 | Negative | 2545544 - 2545768 | 8247.81 |
| integrase | DCX48_12145 | O34419 | Negative | 2545839 - 2546090 | 9255.32 |
| integrase | DCX48_12150 | Q5HFJ8 | Positive | 2546095 - 2547911 | 63378.1 |
| integrase | DCX48_12155 | Not Available | Positive | 2547971 - 2548120 | 5902.87 |
| hypothetical protein | DCX48_12160 | P0DUH5 | Positive | 2548585 - 2549079 | 17780.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
