Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-threonylcarbamoyladenylate synthase type 1 tsac | DCX48_10665 | A8GKG1 | Negative | 2230219 - 2231337 | 41080.5 |
| duf494 domain-containing protein | DCX48_10670 | Q6D004 | Negative | 2231358 - 2231831 | 18567.2 |
| dna-protecting protein dpra | DCX48_10675 | P30852 | Negative | 2231803 - 2232924 | 40507.0 |
| peptide deformylase | DCX48_10680 | Q6D002 | Positive | 2233053 - 2233562 | 19378.5 |
| methionyl-trna formyltransferase | DCX48_10685 | Q6D001 | Positive | 2233589 - 2234536 | 34152.2 |
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | DCX48_10690 | Q6D000 | Positive | 2234604 - 2235893 | 48239.1 |
| trk system potassium transporter trka | DCX48_10695 | P0AGJ0 | Positive | 2235950 - 2237326 | 50079.4 |
| large-conductance mechanosensitive channel protein mscl | DCX48_10700 | Q6CZZ8 | Positive | 2237418 - 2237828 | 14984.8 |
| alternative ribosome-rescue factor a | DCX48_10705 | P36675 | Negative | 2237859 - 2238071 | 8192.83 |
| 50s ribosomal protein l17 | DCX48_10710 | Q6CZZ6 | Negative | 2238279 - 2238671 | 14740.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
