Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isocitrate lyase | DCX48_10615 | P51066 | Negative | 2220144 - 2221451 | 47958.5 |
| malate synthase a | DCX48_10620 | P08997 | Negative | 2221483 - 2223081 | 60817.7 |
| homoserine o-succinyltransferase | DCX48_10625 | Q6D009 | Negative | 2223366 - 2224295 | 35516.5 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2224789 - 2224904 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 2225015 - 2227235 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 2227431 - 2227506 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 2227549 - 2227625 | Not Available |
| gamma carbonic anhydrase family protein | DCX48_10650 | P0A9W9 | Positive | 2228585 - 2229133 | 19784.1 |
| duf1488 domain-containing protein | DCX48_10655 | P45795 | Negative | 2229118 - 2229375 | 10240.0 |
| shikimate dehydrogenase | DCX48_10660 | Q6D006 | Negative | 2229372 - 2230199 | 29629.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
