Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | DCX48_10365 | P0AF68 | Negative | 2160142 - 2160624 | 17489.9 |
| bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimerase | DCX48_10370 | P31806 | Negative | 2160644 - 2162200 | 55371.8 |
| trna epoxyqueuosine(34) reductase queg | DCX48_10375 | Q7CKM4 | Positive | 2162343 - 2163482 | 43382.5 |
| alkyl hydroperoxide reductase subunit f | DCX48_10380 | P19480 | Negative | 2164006 - 2165586 | 56403.4 |
| alkyl hydroperoxide reductase subunit c | DCX48_10385 | P0A252 | Negative | 2165717 - 2166280 | 20898.7 |
| duf4173 domain-containing protein | DCX48_10390 | P45804 | Negative | 2166391 - 2168040 | 61281.5 |
| hypothetical protein | DCX48_10395 | Not Available | Positive | 2168396 - 2168905 | 18315.8 |
| Trna-gly | Not Available | Not Available | Positive | 2169207 - 2169282 | Not Available |
| hypothetical protein | DCX48_10405 | Not Available | Negative | 2169585 - 2171063 | 53059.7 |
| d-2-hydroxyacid dehydrogenase | DCX48_10410 | A8GD46 | Negative | 2171286 - 2172212 | 33799.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
