Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | DCX48_09765 | Q6D0I1 | Negative | 2020250 - 2021566 | 47343.7 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | DCX48_09770 | Q6D0I0 | Negative | 2021570 - 2022652 | 39802.0 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DCX48_09775 | P11880 | Negative | 2022646 - 2024007 | 47805.4 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | DCX48_09780 | Q6D0H8 | Negative | 2024004 - 2025491 | 53094.6 |
| peptidoglycan glycosyltransferase ftsi | DCX48_09785 | P0AD69 | Negative | 2025478 - 2027241 | 63730.9 |
| cell division protein ftsl | DCX48_09790 | Q7CGA7 | Negative | 2027265 - 2027585 | 12000.7 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase | DCX48_09795 | Q6D0H5 | Negative | 2027582 - 2028526 | 34696.7 |
| transcriptional regulator mraz | DCX48_09800 | Q6D0H4 | Negative | 2028529 - 2028987 | 17635.2 |
| l-alanine exporter alae | DCX48_09805 | D0KMH4 | Positive | 2029805 - 2030242 | 16147.9 |
| catabolite repressor/activator | DCX48_09810 | P0A2P9 | Negative | 2030310 - 2031314 | 37781.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
