Pectobacterium atrosepticum G/39, G39

RodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium atrosepticum G/39, also referred to as G39, is a Gram-negative, anaerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This mesophilic organism thrives optimally at a temperature of 27°C and can grow within a specific temperature range suitable for mesophiles. Notably, G39 possesses two replicons, indicating a complex genetic architecture. Pectobacterium atrosepticum is known for its free-living biotic relationship, primarily affecting a variety of host plants. These include Solanum tuberosum (potato), Daucus carota (carrot), Beta vulgaris subsp. vulgaris (beet), Cynara cardunculus var. scolymus (globe artichoke), and Cichorium intybus (endive). The bacterium is associated with soft rot, a significant plant disease that leads to tissue decay and economic losses in agricultural practices. The presence of G39 in such a diverse range of hosts underscores its ecological versatility and potential impact on crop health and yield. Understanding the traits of Pectobacterium atrosepticum, particularly its pathogenicity and environmental adaptability, is crucial for developing effective management strategies against soft rot in affected crops. The accessions CP036163.1 and CP036162.1 provide valuable genomic resources for further research into its biology and interactions with host plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium atrosepticum
StrainG/39, G39

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pectobacterium atrosepticum G/39, G39
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature27
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityPlant

Genome Summary

Pectobacterium atrosepticum G/39, G39, Complete Genome

Gene Summary

Adenine Count

1203999 bp

Thymine Count

1202297 bp

Guanine Count

1258344 bp

Cytosine Count

1258759 bp

Genome Length

4923399 bp

Protein-coding Genes

4302 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yhch/yjgk/yial family proteinDCX48_09515P0AF96Positive1961751 - 196221817068.4
sdr family oxidoreductaseDCX48_09520Q9KQH7Positive1962369 - 196305823929.2
choline trimethylamine-lyaseDCX48_09525Q30W70Positive1963609 - 196611393586.0
choline tma-lyase-activating enzymeDCX48_09530Q30W71Positive1966199 - 196714935718.1
multidrug efflux smr transporterDCX48_09535P0AGC9Positive1967475 - 196789115208.0
multidrug efflux smr transporterDCX48_09540O87868Positive1967909 - 196823511898.1
laci family dna-binding transcriptional regulatorDCX48_09545P0ACP6Negative1968395 - 196958543610.6
pts sugar transporter subunit iiaDCX48_09550P39363Positive1969891 - 197033415954.1
pts sugar transporter subunit iibDCX48_09555Q9EXD8Positive1970357 - 19706449932.34
pts ascorbate transporter subunit iicDCX48_09560Q83II9Positive1970660 - 197191944380.9

Displaying genes 1851 – 1860 of 4578 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725

Displaying health effects 1 – 1 of 1 in total