Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yhch/yjgk/yial family protein | DCX48_09515 | P0AF96 | Positive | 1961751 - 1962218 | 17068.4 |
| sdr family oxidoreductase | DCX48_09520 | Q9KQH7 | Positive | 1962369 - 1963058 | 23929.2 |
| choline trimethylamine-lyase | DCX48_09525 | Q30W70 | Positive | 1963609 - 1966113 | 93586.0 |
| choline tma-lyase-activating enzyme | DCX48_09530 | Q30W71 | Positive | 1966199 - 1967149 | 35718.1 |
| multidrug efflux smr transporter | DCX48_09535 | P0AGC9 | Positive | 1967475 - 1967891 | 15208.0 |
| multidrug efflux smr transporter | DCX48_09540 | O87868 | Positive | 1967909 - 1968235 | 11898.1 |
| laci family dna-binding transcriptional regulator | DCX48_09545 | P0ACP6 | Negative | 1968395 - 1969585 | 43610.6 |
| pts sugar transporter subunit iia | DCX48_09550 | P39363 | Positive | 1969891 - 1970334 | 15954.1 |
| pts sugar transporter subunit iib | DCX48_09555 | Q9EXD8 | Positive | 1970357 - 1970644 | 9932.34 |
| pts ascorbate transporter subunit iic | DCX48_09560 | Q83II9 | Positive | 1970660 - 1971919 | 44380.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
