Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hcp family type vi secretion system effector | DCX48_09315 | Q9HI36 | Positive | 1912114 - 1912593 | 17850.2 |
| integrase | DCX48_09320 | Not Available | Negative | 1912642 - 1913048 | 14982.2 |
| duf1240 domain-containing protein | DCX48_09325 | Not Available | Negative | 1913100 - 1913507 | 15606.1 |
| hypothetical protein | DCX48_09330 | Not Available | Negative | 1913500 - 1914360 | 31590.1 |
| type i-f crispr-associated endonuclease cas1 | DCX48_09335 | Q6D0X0 | Positive | 1917159 - 1918139 | 36251.2 |
| type i-f crispr-associated helicase cas3 | DCX48_09340 | Q6D0W9 | Positive | 1918136 - 1921432 | 124936.0 |
| type i-f crispr-associated protein csy1 | DCX48_09345 | Q6D0W8 | Positive | 1921798 - 1923129 | 50374.4 |
| type i-f crispr-associated protein csy2 | DCX48_09350 | Q6D0W7 | Positive | 1923126 - 1924058 | 34976.5 |
| type i-f crispr-associated protein csy3 | DCX48_09355 | Q6D0W6 | Positive | 1924072 - 1925085 | 36782.5 |
| type i-f crispr-associated endoribonuclease cas6/csy4 | DCX48_09360 | Q6D0W5 | Positive | 1925095 - 1925649 | 20456.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
