Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate decarboxylase | DCX48_09215 | P00861 | Negative | 1891576 - 1892838 | 46055.8 |
| lysr family transcriptional regulator | DCX48_09220 | P03030 | Positive | 1892974 - 1893897 | 34038.4 |
| lysr family transcriptional regulator | DCX48_09225 | Q0TD46 | Negative | 1893924 - 1894832 | 33605.8 |
| mbl fold metallo-hydrolase | DCX48_09230 | Not Available | Positive | 1894940 - 1895821 | 31765.2 |
| dsba family protein | DCX48_09235 | Not Available | Positive | 1895809 - 1896465 | 23886.5 |
| hypothetical protein | DCX48_09240 | Not Available | Positive | 1896659 - 1896952 | 11149.8 |
| integrase | DCX48_09245 | Not Available | Positive | 1897066 - 1897801 | 28048.3 |
| duf262 domain-containing protein | DCX48_09250 | Not Available | Positive | 1898073 - 1899764 | 64960.0 |
| trna dihydrouridine(20/20a) synthase dusa | DCX48_09255 | Q8Z1T1 | Positive | 1900111 - 1901133 | 37699.0 |
| envelope stress response protein pspg | DCX48_09260 | P32696 | Positive | 1901300 - 1901572 | 10503.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
