Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamylcyclotransferase | DCX48_08915 | P0AE50 | Negative | 1831098 - 1831448 | 13334.0 |
| translocation/assembly module tamb | DCX48_08920 | D2TN57 | Negative | 1831451 - 1835488 | 144596.0 |
| outer membrane protein assembly factor | DCX48_08925 | D2TN56 | Negative | 1835485 - 1837200 | 63780.0 |
| peptide-methionine (s)-s-oxide reductase msra | DCX48_08930 | Q6D151 | Positive | 1837677 - 1838315 | 23576.6 |
| hlyc/corc family transporter | DCX48_08935 | A0A0F6BAS6 | Positive | 1838487 - 1839812 | 49058.0 |
| duf1107 domain-containing protein | DCX48_08940 | P0ADE3 | Negative | 1839877 - 1840083 | 8048.07 |
| ytfj family protein | DCX48_08945 | P39187 | Positive | 1840432 - 1841010 | 21323.8 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | DCX48_08950 | Q8XCG6 | Negative | 1841013 - 1841753 | 27178.1 |
| bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | DCX48_08955 | P53052 | Positive | 1842082 - 1844034 | 71675.6 |
| nadph-dependent fmn reductase | DCX48_08960 | A0A0H2ZDT7 | Positive | 1844225 - 1844779 | 19407.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
