Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-methionine abc transporter, atp-binding protein | DCX48_08565 | Q6D1C4 | Positive | 1742641 - 1743672 | 37759.7 |
| d-methionine abc transporter permease meti | DCX48_08570 | P31547 | Positive | 1743665 - 1744318 | 23148.5 |
| metq/nlpa family lipoprotein | DCX48_08575 | P28635 | Positive | 1744380 - 1745195 | 29482.4 |
| rcs stress response system protein rcsf | DCX48_08580 | P69412 | Positive | 1745303 - 1745713 | 14287.4 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | DCX48_08585 | P28634 | Positive | 1745710 - 1746426 | 26668.1 |
| proline--trna ligase | DCX48_08590 | Q6D1B9 | Positive | 1746572 - 1748290 | 63805.6 |
| rna polymerase sigma factor rpos | DCX48_08595 | P13445 | Negative | 1748396 - 1749388 | 38102.1 |
| murein hydrolase activator nlpd | DCX48_08600 | Q56131 | Negative | 1749442 - 1750476 | 35593.6 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | DCX48_08605 | Q6D1B6 | Negative | 1750901 - 1751527 | 23159.1 |
| trna pseudouridine(13) synthase trud | DCX48_08610 | Q6D1B5 | Negative | 1751666 - 1752712 | 38898.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
