Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin trxc | DCX48_08515 | P0AGG6 | Positive | 1732801 - 1733220 | 15519.6 |
| dtw domain-containing protein | DCX48_08520 | Q47319 | Positive | 1733367 - 1734119 | 28213.1 |
| bifunctional acyl-coa synthetase/gnat family n-acetyltransferase | DCX48_08525 | P76594 | Positive | 1734152 - 1736800 | 96877.1 |
| cdp-diacylglycerol--serine o-phosphatidyltransferase | DCX48_08530 | P23830 | Positive | 1736978 - 1738333 | 52541.7 |
| yfim family lipoprotein | DCX48_08535 | P46126 | Positive | 1738396 - 1738719 | 11755.8 |
| mfs transporter | DCX48_08540 | P0AEX3 | Negative | 1738716 - 1739996 | 46438.4 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 1740304 - 1740419 | Not Available |
| Trna-thr | Not Available | Not Available | Positive | 1740456 - 1740531 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 1740550 - 1740665 | Not Available |
| d-glycero-beta-d-manno-heptose 1,7-bisphosphate 7-phosphatase | DCX48_08560 | Q8ZH37 | Negative | 1741897 - 1742460 | 20821.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
