Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-methyl-5-thioribose kinase | DCX48_08315 | Q6D1H0 | Negative | 1691597 - 1692799 | 44491.9 |
| s-methyl-5-thioribose-1-phosphate isomerase | DCX48_08320 | C6DCZ1 | Positive | 1692918 - 1693946 | 36578.0 |
| type vi secretion system paar protein | DCX48_08325 | Not Available | Negative | 1694006 - 1694272 | 8447.89 |
| hypothetical protein | DCX48_08330 | Not Available | Negative | 1694312 - 1696027 | 63957.4 |
| hypothetical protein | DCX48_08335 | Not Available | Negative | 1696024 - 1696545 | 19509.7 |
| hypothetical protein | DCX48_08340 | Not Available | Negative | 1696664 - 1697182 | 19419.5 |
| duf4123 domain-containing protein | DCX48_08345 | Not Available | Negative | 1697179 - 1697904 | 27144.6 |
| type vi secretion system tip protein vgrg | DCX48_08350 | E0SAL0 | Negative | 1697906 - 1699933 | 73927.4 |
| acireductone dioxygenase | DCX48_08355 | Q6D1G3 | Negative | 1700516 - 1701061 | 20598.1 |
| acireductone synthase | DCX48_08360 | Q6D1G2 | Negative | 1701058 - 1701747 | 25876.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
