Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system contractile sheath large subunit | DCX48_08165 | Q9I748 | Negative | 1658343 - 1659821 | 55276.8 |
| type vi secretion system contractile sheath small subunit | DCX48_08170 | Q9I749 | Negative | 1659853 - 1660356 | 18548.3 |
| efflux transporter outer membrane subunit | DCX48_08175 | Q51397 | Negative | 1661426 - 1662829 | 51655.0 |
| multidrug efflux rnd transporter permease subunit | DCX48_08180 | P52002 | Negative | 1662826 - 1665969 | 112579.0 |
| efflux rnd transporter periplasmic adaptor subunit | DCX48_08185 | P0C069 | Negative | 1666052 - 1667224 | 41931.0 |
| tetr/acrr family transcriptional regulator | DCX48_08190 | P32265 | Positive | 1667414 - 1667986 | 21076.4 |
| histidine phosphatase family protein | DCX48_08195 | Not Available | Negative | 1668284 - 1668829 | 19706.1 |
| hypothetical protein | DCX48_08200 | Not Available | Positive | 1669266 - 1669757 | 18612.4 |
| putative adenosine monophosphate-protein transferase fic | DCX48_08205 | P20751 | Positive | 1669750 - 1670334 | 22125.9 |
| integrase | DCX48_08210 | P16943 | Positive | 1670494 - 1671361 | 32138.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
