Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system-associated protein tago | DCX48_08115 | Not Available | Negative | 1646572 - 1647132 | 20360.2 |
| sigma-54-dependent fis family transcriptional regulator | DCX48_08120 | Q9KN48 | Negative | 1647132 - 1648685 | 58363.4 |
| type vi secretion system atpase tssh | DCX48_08125 | Q9I742 | Negative | 1648688 - 1651285 | 95429.3 |
| dotu family type iv/vi secretion system protein | DCX48_08130 | Not Available | Negative | 1651299 - 1652075 | 30073.2 |
| type vi secretion system baseplate subunit tssk | DCX48_08135 | Q9I753 | Negative | 1652091 - 1653428 | 49390.0 |
| type vi secretion system lipoprotein tssj | DCX48_08140 | Not Available | Negative | 1653431 - 1653952 | 19350.0 |
| type vi secretion system-associated fha domain protein tagh | DCX48_08145 | Not Available | Negative | 1653952 - 1655172 | 45145.1 |
| type vi secretion system baseplate subunit tssg | DCX48_08150 | Not Available | Negative | 1655175 - 1656173 | 37622.9 |
| type vi secretion system baseplate subunit tssf | DCX48_08155 | Q9I744 | Negative | 1656137 - 1657903 | 67128.1 |
| type vi secretion system baseplate subunit tsse | DCX48_08160 | Not Available | Negative | 1657906 - 1658337 | 16318.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
