Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4123 domain-containing protein | DCX48_08065 | Not Available | Negative | 1631412 - 1632368 | 36881.7 |
| hypothetical protein | DCX48_08070 | Q5UQV3 | Negative | 1632537 - 1633235 | 25534.4 |
| hypothetical protein | DCX48_08075 | Not Available | Negative | 1633301 - 1633999 | 25726.5 |
| duf2974 domain-containing protein | DCX48_08080 | P18952 | Negative | 1634080 - 1635453 | 46635.6 |
| type vi secretion system tip protein vgrg | DCX48_08085 | E0SAL0 | Negative | 1635463 - 1637499 | 75006.0 |
| hcp family type vi secretion system effector | DCX48_08090 | Q9HI36 | Negative | 1637682 - 1638200 | 19125.6 |
| sel1 repeat family protein | DCX48_08095 | Not Available | Negative | 1638750 - 1640105 | 50008.7 |
| hypothetical protein | DCX48_08100 | Not Available | Negative | 1640134 - 1641570 | 54986.1 |
| type vi secretion system membrane subunit tssm | DCX48_08105 | Q9I755 | Negative | 1641620 - 1645117 | 132403.0 |
| type vi secretion system protein tssa | DCX48_08110 | Not Available | Negative | 1645142 - 1646560 | 52432.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
