Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome maturation factor rimm | DCX48_07815 | Q6D1T9 | Negative | 1590423 - 1590971 | 20393.4 |
| 30s ribosomal protein s16 | DCX48_07820 | Q6D1T8 | Negative | 1590990 - 1591238 | 9099.02 |
| signal recognition particle protein | DCX48_07825 | P0AGD9 | Negative | 1591396 - 1592757 | 49969.7 |
| inner membrane protein ypjd | DCX48_07830 | P64434 | Positive | 1592927 - 1593721 | 29595.3 |
| s-ribosylhomocysteine lyase | DCX48_07835 | Q6D1T5 | Negative | 1593828 - 1594343 | 19313.1 |
| glutamate--cysteine ligase | DCX48_07840 | Q6D1T4 | Negative | 1594497 - 1596050 | 58342.4 |
| deda family protein | DCX48_07845 | P0ADR0 | Negative | 1596133 - 1596561 | 15554.5 |
| fructose-1-phosphate/6-phosphogluconate phosphatase | DCX48_07850 | P77475 | Negative | 1596558 - 1597124 | 20911.0 |
| Trna-arg | Not Available | Not Available | Positive | 1597648 - 1597724 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1597915 - 1597991 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
