Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyamine aminopropyltransferase | DCX48_07665 | Q6D1W4 | Positive | 1561579 - 1562442 | 32338.1 |
| adenosylmethionine decarboxylase | DCX48_07670 | Q6D1W3 | Positive | 1562488 - 1563282 | 30359.1 |
| glutaredoxin-like protein nrdh | DCX48_07675 | P0AC67 | Positive | 1563883 - 1564122 | 8923.69 |
| class ib ribonucleoside-diphosphate reductase assembly flavoprotein nrdi | DCX48_07680 | Q6D1W1 | Positive | 1564132 - 1564539 | 14974.0 |
| class 1b ribonucleoside-diphosphate reductase subunit alpha | DCX48_07685 | P0A5W9 | Positive | 1564518 - 1566683 | 81875.3 |
| class 1b ribonucleoside-diphosphate reductase subunit beta | DCX48_07690 | P17424 | Positive | 1566708 - 1567670 | 36555.9 |
| Trna-asp | Not Available | Not Available | Positive | 1567790 - 1567866 | Not Available |
| dna polymerase iii subunit epsilon | DCX48_07700 | P0A1H0 | Negative | 1568038 - 1568775 | 27926.4 |
| ribonuclease hi | DCX48_07705 | Q6D1V7 | Positive | 1568831 - 1569295 | 17372.5 |
| class i sam-dependent methyltransferase | DCX48_07710 | P75672 | Negative | 1569315 - 1570025 | 26954.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
