Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptidase i | DCX48_07365 | P0A1W3 | Negative | 1502747 - 1503712 | 35488.7 |
| elongation factor 4 | DCX48_07370 | Q6D217 | Negative | 1503729 - 1505528 | 66656.4 |
| hypothetical protein | DCX48_07375 | Not Available | Positive | 1505520 - 1505732 | 8004.81 |
| soxr-reducing system protein rsec | DCX48_07380 | P46187 | Negative | 1505825 - 1506277 | 15924.7 |
| sigma-e factor regulatory protein rseb | DCX48_07385 | P0AFY0 | Negative | 1506274 - 1507236 | 35830.9 |
| anti-sigma-e factor rsea | DCX48_07390 | D0ZSY8 | Negative | 1507236 - 1507883 | 23605.9 |
| rna polymerase sigma factor rpoe | DCX48_07395 | D0ZSY9 | Negative | 1507943 - 1508518 | 21752.9 |
| l-aspartate oxidase | DCX48_07400 | Q8ZD80 | Positive | 1508898 - 1510499 | 59675.0 |
| trna1(val) (adenine(37)-n6)-methyltransferase | DCX48_07405 | Q6D211 | Negative | 1510588 - 1511334 | 27869.4 |
| atp-dependent rna helicase srmb | DCX48_07410 | P21507 | Positive | 1511469 - 1512794 | 49895.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
