Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | DCX48_07065 | P76576 | Negative | 1424179 - 1424799 | 22448.3 |
| histidine--trna ligase | DCX48_07070 | Q6D277 | Negative | 1424813 - 1426087 | 47339.7 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | DCX48_07075 | Q6D276 | Negative | 1426225 - 1427346 | 40785.3 |
| cytoskeleton protein rodz | DCX48_07080 | Q6D275 | Negative | 1427387 - 1428385 | 35420.0 |
| type iv pilus biogenesis/stability protein pilw | DCX48_07085 | Q9HXJ2 | Negative | 1428375 - 1429130 | 27903.0 |
| bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmn | DCX48_07090 | Q6D273 | Negative | 1429364 - 1430530 | 43329.6 |
| nucleoside-diphosphate kinase | DCX48_07095 | Q6D272 | Negative | 1430865 - 1431293 | 15493.3 |
| pts glucose transporter subunit iibc | DCX48_07100 | Q9AGA7 | Positive | 1431652 - 1433232 | 56914.7 |
| 6-phospho-alpha-glucosidase | DCX48_07105 | C7NB67 | Positive | 1433246 - 1434607 | 50809.1 |
| 3-mercaptopyruvate sulfurtransferase | DCX48_07110 | P58388 | Positive | 1434711 - 1435580 | 31509.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
