Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium atrosepticum |
| Strain | G/39, G39 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 27 |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Solanum tuberosum, Daucus carota, Beta vulgaris subsp. vulgaris |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1203999 bp
Thymine Count
1202297 bp
Guanine Count
1258344 bp
Cytosine Count
1258759 bp
Genome Length
4923399 bp
Protein-coding Genes
4302 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter | DCX48_00640 | Q6D3R1 | Negative | 1780 - 3468 | 60429.9 |
| hypothetical protein | DCX48_00645 | P64440 | Positive | 3844 - 4215 | 13800.6 |
| grxa family glutaredoxin | DCX48_00650 | P0A1P9 | Negative | 4286 - 4552 | 9953.85 |
| oxygen-insensitive nadph nitroreductase | DCX48_00655 | Q9Z5Z2 | Positive | 4968 - 5687 | 26946.5 |
| 30s ribosomal protein s6--l-glutamate ligase | DCX48_00660 | Q6D3R5 | Positive | 5704 - 6615 | 32829.8 |
| ybjn domain-containing protein | DCX48_00665 | P0AAY8 | Positive | 6862 - 7341 | 17621.2 |
| spermidine/putrescine abc transporter substrate-binding protein potf | DCX48_00670 | P31133 | Positive | 7710 - 8819 | 40766.6 |
| putrescine abc transporter atp-binding subunit potg | DCX48_00675 | P31134 | Positive | 9091 - 10224 | 41992.1 |
| putrescine abc transporter permease poth | DCX48_00680 | P31135 | Positive | 10239 - 11204 | 36487.8 |
| putrescine abc transporter permease poti | DCX48_00685 | P0AFL2 | Positive | 11201 - 12046 | 30958.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
