Bacteroides nordii

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides nordii is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This species is part of the Bacteroides genus, which is known for its role in the human gut microbiome. Bacteroides nordii has a single replicon, indicating a streamlined genetic architecture, and is cataloged under the accession number CP082886.1 in genomic databases. As an anaerobe, Bacteroides nordii thrives in environments devoid of oxygen, which is typical for many members of the Bacteroides genus that colonize the gastrointestinal tract. The presence of flagella suggests that Bacteroides nordii may have the ability to move towards nutrients or away from harmful substances, which could be advantageous in the complex environment of the gut. The ecological role of Bacteroides nordii can be inferred from its classification within the Bacteroides genus, which is known for its contribution to the breakdown of complex carbohydrates, aiding in digestion and nutrient absorption in the host. This process plays a critical role in maintaining gut health and supporting the host's immune system. Understanding the specific traits of Bacteroides nordii contributes to broader knowledge of microbial interactions within the gut ecosystem and highlights the importance of anaerobic bacteria in human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides nordii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides nordii
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides nordii


Gene Summary

Adenine Count

1667851 bp

Thymine Count

1702519 bp

Guanine Count

1158054 bp

Cytosine Count

1150158 bp

Genome Length

5678582 bp

Protein-coding Genes

4241 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rtec domain-containing proteinK8P02_05100Not AvailableNegative1329613 - 133021823287.1
dihydrofolate reductase family proteinK8P02_05105Not AvailableNegative1330457 - 133087916017.4
sigma-54 dependent transcriptional regulatorK8P02_05110Q9APD9Negative1331159 - 133248149662.1
response regulatorK8P02_05115P30855Negative1332474 - 133479286984.1
tetracycline resistance ribosomal protection protein tet(q)K8P02_05120Q00937Negative1334792 - 133671772159.9
n-6 dna methylaseK8P02_05125Q71TF8Negative1337374 - 1343187220151.0
duf1896 domain-containing proteinK8P02_05130Not AvailableNegative1343177 - 134362917330.1
topoisomerase c-terminal repeat-containing proteinK8P02_05135P96583Negative1343792 - 134587977491.9
duf3945 domain-containing proteinK8P02_05140Not AvailableNegative1345941 - 134750959842.2
helix-turn-helix domain-containing proteinK8P02_05145Not AvailableNegative1347530 - 134788013925.0

Displaying genes 1021 – 1030 of 4339 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

329 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 329 metabolites

Health Effects

No health effects information available for this bacterium.