Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxydohydrogena |
| Strain | Z-1062 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
614120 bp
Thymine Count
614391 bp
Guanine Count
1021703 bp
Cytosine Count
1021226 bp
Genome Length
3271440 bp
Protein-coding Genes
3090 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | AFIC_002300 | B3Q6P8 | Positive | 2386888 - 2387373 | 18144.0 |
| anti-sigma factor | AFIC_002301 | Not Available | Positive | 2387403 - 2388176 | 28554.6 |
| prc-barrel domain-containing protein | AFIC_002302 | Not Available | Negative | 2388274 - 2388624 | 12546.9 |
| hypothetical protein | AFIC_002303 | Not Available | Negative | 2388761 - 2389057 | 10864.0 |
| j domain-containing protein | AFIC_002304 | A5W9N6 | Negative | 2389143 - 2390117 | 33908.2 |
| rt0821/lpp0805 family surface protein | AFIC_002305 | Q84I68 | Negative | 2390201 - 2390641 | 15359.9 |
| pyridoxamine 5'-phosphate oxidase | AFIC_002306 | Q1QQ51 | Positive | 2390747 - 2391382 | 23744.0 |
| sdr family oxidoreductase | AFIC_002307 | P05406 | Positive | 2391428 - 2392183 | 26839.0 |
| dna ligase d | AFIC_002308 | Q9I1X7 | Positive | 2392246 - 2394903 | 97812.7 |
| divalent-cation tolerance protein cuta | AFIC_002309 | Q7SIA8 | Negative | 2394905 - 2395222 | 11635.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
